CDS

Accession Number TCMCG051C04080
gbkey CDS
Protein Id XP_024461856.1
Location join(32312398..32312847,32312933..32313145,32314742..32315056)
Gene LOC18095236
GeneID 18095236
Organism Populus trichocarpa

Protein

Length 325aa
Molecule type protein
Topology linear
Data_file_division PLN
dblink BioProject:PRJNA17973
db_source XM_024606088.1
Definition cold shock domain-containing protein 3 [Populus trichocarpa]

EGGNOG-MAPPER Annotation

COG_category O
Description Introduces a single-strand break via transesterification at a target site in duplex DNA. Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand
KEGG_TC -
KEGG_Module -
KEGG_Reaction -
KEGG_rclass -
BRITE ko00000        [VIEW IN KEGG]
ko03000        [VIEW IN KEGG]
KEGG_ko ko:K09250        [VIEW IN KEGG]
EC -
KEGG_Pathway -
GOs GO:0003674        [VIEW IN EMBL-EBI]
GO:0003824        [VIEW IN EMBL-EBI]
GO:0003916        [VIEW IN EMBL-EBI]
GO:0003917        [VIEW IN EMBL-EBI]
GO:0005575        [VIEW IN EMBL-EBI]
GO:0005622        [VIEW IN EMBL-EBI]
GO:0005623        [VIEW IN EMBL-EBI]
GO:0005634        [VIEW IN EMBL-EBI]
GO:0005654        [VIEW IN EMBL-EBI]
GO:0006139        [VIEW IN EMBL-EBI]
GO:0006259        [VIEW IN EMBL-EBI]
GO:0006265        [VIEW IN EMBL-EBI]
GO:0006725        [VIEW IN EMBL-EBI]
GO:0006807        [VIEW IN EMBL-EBI]
GO:0006996        [VIEW IN EMBL-EBI]
GO:0008150        [VIEW IN EMBL-EBI]
GO:0008152        [VIEW IN EMBL-EBI]
GO:0009987        [VIEW IN EMBL-EBI]
GO:0016043        [VIEW IN EMBL-EBI]
GO:0016604        [VIEW IN EMBL-EBI]
GO:0016605        [VIEW IN EMBL-EBI]
GO:0016853        [VIEW IN EMBL-EBI]
GO:0031974        [VIEW IN EMBL-EBI]
GO:0031981        [VIEW IN EMBL-EBI]
GO:0034641        [VIEW IN EMBL-EBI]
GO:0043170        [VIEW IN EMBL-EBI]
GO:0043226        [VIEW IN EMBL-EBI]
GO:0043227        [VIEW IN EMBL-EBI]
GO:0043229        [VIEW IN EMBL-EBI]
GO:0043231        [VIEW IN EMBL-EBI]
GO:0043233        [VIEW IN EMBL-EBI]
GO:0044237        [VIEW IN EMBL-EBI]
GO:0044238        [VIEW IN EMBL-EBI]
GO:0044260        [VIEW IN EMBL-EBI]
GO:0044422        [VIEW IN EMBL-EBI]
GO:0044424        [VIEW IN EMBL-EBI]
GO:0044428        [VIEW IN EMBL-EBI]
GO:0044446        [VIEW IN EMBL-EBI]
GO:0044451        [VIEW IN EMBL-EBI]
GO:0044464        [VIEW IN EMBL-EBI]
GO:0046483        [VIEW IN EMBL-EBI]
GO:0051276        [VIEW IN EMBL-EBI]
GO:0070013        [VIEW IN EMBL-EBI]
GO:0071103        [VIEW IN EMBL-EBI]
GO:0071704        [VIEW IN EMBL-EBI]
GO:0071840        [VIEW IN EMBL-EBI]
GO:0090304        [VIEW IN EMBL-EBI]
GO:0140097        [VIEW IN EMBL-EBI]
GO:1901360        [VIEW IN EMBL-EBI]

Sequence

CDS:  
ATGAAATCCAAAAGAGAAACGACAGTAATCGAAATCGAAGACACAGACGACGATGATTTCCTTTCTCAAGTTGCCCAAGCTGAGTCCGAAGCTCTCTCCGCTTCCAACATCAAACGCCGCAAAATCACCACCGTAGGTTTCAACGAAAACCAAGAGAACACCAAAACCACGACGACGACGATCAAAGTGAAGGACGAATACAAAAATGAAGGGGACTACATGGCAGCTTTAAAAGGAAGTAAAAGTACTTTATGGCAACAGCGAATCAAAGCCGTTGGTTCTTCCAAACTCCCTCCTCCTGATTACAATGCTCGCGGTGGCGGTGGCGGTGGCAGTGGGGCGGTGGCTCCCGAGAAGGTGTGTCCTTGTGGGTTGGGTGTTTGTAATGTTTTTACTGCTAATACTGAAAGGAATCGCGGGCGGGATTTCTACAAATGCCCTCAAAGACAGGAAAGTGGGGGTTGTGGATTTTTTCAATGGTGTGATGAATCTCCAGCGGCAAATAATGGTGGTGGGTTCGGTGGGGGTGGGAGCCATGGTTCTGTGTCTAATTCTGTGTTTCCTGAGCTTCAATGTTCATGTGGAGCTGGGTCTTGCTTGATTTTGACGTCTAGAAAAGGGGACAATAATGGGAAGCAATTCTATAAATGTCCTGAAAATCAGGGAGGTTGTGGTTTCTTCAAATGGTGCGATGATAATACTGCATCAGCTGGTCTTCAAGCTAGTGCTCCCAAGGTCTATATCAACATGAATGACTCCAGCAACAAAAGCTTTGGTGCAAGAACCGGATCATCCTGCTTCAAATGTGGCAAGGAAGGCCATTGGGCAAAAGATTGTGGCATGTCTACGTCTGATTCTCCTGCTACATTTGGAGCAGGTTCTGGTTCATCTGGTACTTGTTACAAATGTGGTAAGCCAGGGCATTGGGCAAGGGACTGCACTTCTAGTCAATATAAGAATGTTCCCCAGCAATACTAA
Protein:  
MKSKRETTVIEIEDTDDDDFLSQVAQAESEALSASNIKRRKITTVGFNENQENTKTTTTTIKVKDEYKNEGDYMAALKGSKSTLWQQRIKAVGSSKLPPPDYNARGGGGGGSGAVAPEKVCPCGLGVCNVFTANTERNRGRDFYKCPQRQESGGCGFFQWCDESPAANNGGGFGGGGSHGSVSNSVFPELQCSCGAGSCLILTSRKGDNNGKQFYKCPENQGGCGFFKWCDDNTASAGLQASAPKVYINMNDSSNKSFGARTGSSCFKCGKEGHWAKDCGMSTSDSPATFGAGSGSSGTCYKCGKPGHWARDCTSSQYKNVPQQY